PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0173.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 422aa    MW: 46569.3 Da    PI: 8.4446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0173.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-065678123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C++ F r  nL+ H r+H
  Kaladp0070s0173.1.p 56 YVCEICNQGFQRDQNLQMHRRRH 78
                         9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.57E-55578No hitNo description
SMARTSM003550.00525678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035598106136IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.57E-5137162No hitNo description
SMARTSM00355130142169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLDPQASNNN NTAASTSSFQ NGLSSSKRKR RPAGTPDPDA EVVALSPKTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLVRREDS NKNGSGSNQE AKKRVYVCPE PSCLHHDASH  120
ALGDLVGIKK HFRRKHSNYK QWVCDKCCKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDAC TIKRVDPPQH QLQLPAAAFQ PACSSSTSPS GCGETAGLAM SHFQRVMQQA  240
PKAIQQQEPS RSHYLKQHNL LELQLLPSSS NTMTSPDNDK NETTLLRLSV GTFGGGGGQP  300
RCEEEATILR VAVAEKEYAE EVRRRSKREL ELAELEFENA KRIRQQALGE LERAKALRDE  360
AVKKISSTIM EITCQACQQQ FQTSNVVAAP PLLPLAEESS LAVSFMSSAA SEGDGGGGHQ  420
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467178.11e-166PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X71e-142IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A0D2QEG81e-166A0A0D2QEG8_G
STRINGPOPTR_0008s13980.11e-163(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-117indeterminate(ID)-domain 14